SNP Profiles of CCN 16 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AA	CG	CT	TT	AA	CC	TT	CT	TT	AT	AG	CT	AG
1._CCN_16	CT	AA	CG	CT	TT	AA	CC	TT	CT	TT	AT	AG	CT	AG
2._CCN_16	CT	AA	CG	CT	TT	AA	CC	TT	CT	TT	AT	AG	CT	AG
3._CCN_16	CT	AA	CG	CT	TT	AA	CC	TT	CT	TT	AT	AG	CT	AG
4._GC-01-11-1-11	CT	AA	CG	CT	TT	AA	CC	TT	CT	TT	AT	AG	CT	AG
5._GC-01-11-1-11	CT	AA	CG	CT	TT	AA	CC	TT	CT	TT	AT	AG	CT	AG
6._GC-01-011-1-11	CT	AA	CG	CT	TT	AA	CC	TT	CT	TT	AT	AG	CT	AG
7._GC-01-011-1-11	CT	AA	CG	CT	TT	AA	CC	TT	CT	TT	AT	AG	CT	AG
8._CCN_16	CT	AG	CG	CT	TT	AC	CC	TT	CT	TT	AT	AG	CT	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AT	GG	CC	CT	CG	GG	AA	TT	AC	CC	GT	CT	AC
1._CCN_16	TT	AT	GG	CC	CT	CG	GG	AA	TT	AC	CC	GT	CT	AC
2._CCN_16	TT	AT	GG	CC	CT	CG	GG	AA	TT	AC	CC	GT	CT	AC
3._CCN_16	TT	AT	GG	CC	CT	CG	GG	AA	TT	AC	CC	GT	CT	AC
4._GC-01-11-1-11	TT	AT	GG	CC	CT	CG	GG	AA	TT	AC	CC	GT	CT	AC
5._GC-01-11-1-11	TT	AT	GG	CC	CT	CG	GG	AA	TT	AC	CC	GT	CT	AC
6._GC-01-011-1-11	TT	AT	GG	CC	CT	CG	GG	AA	TT	AC	CC	GT	CT	AC
7._GC-01-011-1-11	TT	AT	GG	CC	CT	CG	GG	AA	TT	AC	CC	GT	CT	AC
8._CCN_16	TT	AT	GG	CC	CT	CG	GG	AA	TT	AC	CC	GT	CT	AC

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AG	GG	CC	AA	CG	AA	CT	GT	AC	AT	GG	X_X	X_X	X_X
1._CCN_16	AG	GG	CC	AA	CG	AA	CT	GT	AC	AT	GG	X_X	X_X	X_X
2._CCN_16	AG	GG	CC	AA	CG	AA	CT	GT	AC	AT	GG	X_X	X_X	X_X
3._CCN_16	AG	GG	CC	AA	CG	AA	CT	GT	AC	AT	GG	X_X	X_X	X_X
4._GC-01-11-1-11	AG	GG	CC	AA	CG	AA	CT	GT	AC	AT	GG	X_X	X_X	X_X
5._GC-01-11-1-11	AG	GG	CC	AA	CG	AA	CT	GT	AC	AT	GG	X_X	X_X	X_X
6._GC-01-011-1-11	AG	GG	CC	AA	CG	AA	CT	GT	AC	AT	GG	X_X	X_X	X_X
7._GC-01-011-1-11	AG	GG	CC	AA	CG	AA	CT	GT	AC	AT	GG	X_X	X_X	X_X
8._CCN_16	AG	GG	CC	AA	CG	AA	CT	GT	AC	AT	GG	X_X	X_X	X_X

Input profile: CCN_16

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1109a 6 > FP

Dapeng Zhang, 2016

1._CCN_16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1109a 1 > FP

Dapeng Zhang, 2016

2._CCN_16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1109a 7

Dapeng Zhang, 2016

3._CCN_16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1109a 3

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._CCN_16 GC-01-11-1-11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 1, Rep: 9, Tree: PL1

Notes: PL1 FP1

5._CCN_16 GC-01-11-1-11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 1, Rep: 9, Tree: PL6

Notes: PL6 FP4

6._CCN_16 GC-01-011-1-11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

7._CCN_16 GC-01-011-1-11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

8._CCN_16

97.4 %
39 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25